Index

_

__call__() (msaexp.utils.ClippedColormap method) (msaexp.utils.LookupTablePSF method)

A

add_to_axis() (msaexp.utils.LineList method) all_regions_from_metafile_siaf() (msaexp.msa.MSAMetafile method) append_scaled_orders() (msaexp.utils.LineList method) apply_bad_shutter_mask() (msaexp.slit_combine.SlitGroup method) apply_normalization_correction() (msaexp.slit_combine.SlitGroup method)

apply_spline_bar_correction() (msaexp.slit_combine.SlitGroup method) array_to_bin_edges() (in module msaexp.utils) autoscale (msaexp.utils.ClippedColormap attribute) autoscale_None (msaexp.utils.ClippedColormap attribute) available_lookup_psf_files() (in module msaexp.utils)

B

bspline_array() (msaexp.spectrum.SpectrumSampler method)

build_regular_wavelength_wcs() (in module msaexp.utils) build_slit_centered_wcs() (in module msaexp.utils)

C

cache_badpix_arrays() (in module msaexp.utils) calc_reference_exposure (msaexp.slit_combine.SlitGroup attribute) calc_uncertainty_scale() (in module msaexp.spectrum) calculate_psf_fwhm() (in module msaexp.utils) calculate_slices() (msaexp.slit_combine.SlitGroup method) callbacks (msaexp.utils.ClippedColormap attribute) calzetti2000_alambda() (in module msaexp.resample_numba) calzetti2000_attenuation() (in module msaexp.resample_numba)

center_wcs() (in module msaexp.drizzle) changed (msaexp.utils.ClippedColormap attribute) CLEAN_CENTER_KWARGS (msaexp.utils.LineList attribute) clip (msaexp.utils.ClippedColormap attribute) clip_color_lightness() (msaexp.utils.ClippedColormap static method) ClippedColormap (class in msaexp.utils) colorbar (msaexp.utils.ClippedColormap attribute) combine_2d_with_rejection() (in module msaexp.utils) compute_igm() (in module msaexp.resample_numba)

D

data (msaexp.slit_combine.SlitGroup attribute) demo() (msaexp.utils.LineList method) detector (msaexp.pipeline.NirspecPipeline attribute) do_integrate_filters() (in module msaexp.spectrum) drizzle_2d() (msaexp.pipeline.NirspecPipeline method)

drizzle_2d_pipeline() (in module msaexp.utils) drizzle_slitlets() (in module msaexp.drizzle) drizzle_slits_2d() (in module msaexp.utils) drizzled_hdu_figure() (in module msaexp.utils) (msaexp.spectrum.SpectrumSampler method) drude_profile() (in module msaexp.resample_numba)

E

emission_line() (msaexp.spectrum.SpectrumSampler method) estimate_sky() (msaexp.slit_combine.SlitGroup method) evaluate() (msaexp.utils.LookupTablePSF method) exp_type (msaexp.pipeline.NirspecPipeline attribute) exposure_groups() (in module msaexp.pipeline) exposure_ramp_saturation() (in module msaexp.utils) exptime (msaexp.slit_combine.SlitGroup attribute) extend_dflat() (in module msaexp.pipeline_extended) extend_fs_fflat() (in module msaexp.pipeline_extended)

extend_photom() (in module msaexp.pipeline_extended) extend_quad_fflat() (in module msaexp.pipeline_extended) extend_sflat() (in module msaexp.pipeline_extended) extend_wavelengthrange() (in module msaexp.pipeline_extended) extra_slit_dq_flags() (in module msaexp.utils) extract_all() (in module msaexp.utils) extract_all_slits() (msaexp.pipeline.NirspecPipeline method) extract_from_hdul() (in module msaexp.drizzle) extract_spectra() (in module msaexp.slit_combine) extract_spectrum() (msaexp.pipeline.NirspecPipeline method)

F

fast_emission_line() (msaexp.spectrum.SpectrumSampler method) filter (msaexp.slit_combine.SlitGroup attribute) fit_all_traces() (msaexp.slit_combine.SlitGroup method) fit_mast_pointing_offset() (msaexp.msa.MSAMetafile method) fit_params_by_sn() (msaexp.slit_combine.SlitGroup method) fit_profile() (msaexp.pipeline.NirspecPipeline method) fit_redshift() (in module msaexp.spectrum) fit_redshift_grid() (in module msaexp.spectrum) fit_shutter_offset() (msaexp.slit_combine.SlitGroup method) fit_single_template() (msaexp.spectrum.SpectrumSampler method)

fit_single_trace() (msaexp.slit_combine.SlitGroup method) fixed_rectified_slit_header() (in module msaexp.utils) fixed_slit_flat_field() (in module msaexp.utils) fixed_yshutter (msaexp.slit_combine.SlitGroup attribute) flag_2d_outliers() (msaexp.slit_combine.SlitGroup method) flag_from_profile() (msaexp.slit_combine.SlitGroup method) flag_hot_cold_pixels() (msaexp.slit_combine.SlitGroup method) flag_percentile_outliers() (msaexp.slit_combine.SlitGroup method) flag_trace_outliers() (msaexp.slit_combine.SlitGroup method) from_table() (msaexp.utils.LineList static method) full_pipeline() (msaexp.pipeline.NirspecPipeline method)

G

get_background_slits() (msaexp.pipeline.NirspecPipeline method) get_clim (msaexp.utils.ClippedColormap attribute) get_color_lightness() (msaexp.utils.ClippedColormap static method) get_default_resolution_curve() (in module msaexp.utils) get_exposure_info() (msaexp.msa.MSAMetafile method) get_flat_diff_arrays() (msaexp.slit_combine.SlitGroup method) get_global_sky() (msaexp.slit_combine.SlitGroup method) get_miri_lrs_disp() (in module msaexp.utils) get_muse_lsf() (in module msaexp.utils) get_nircam_wfss_disp() (in module msaexp.utils) get_nirspec_psf_fwhm() (in module msaexp.utils) get_normalization_correction() (in module msaexp.utils) get_prism_bar_correction() (in module msaexp.utils) get_prism_wave_bar_correction() (in module msaexp.utils)

get_shutter_wavelength_limits() (in module msaexp.msa) get_siaf_aperture() (msaexp.msa.MSAMetafile method) get_siaf_transforms() (msaexp.msa.MSAMetafile method) get_slit_coordinates() (in module msaexp.utils) get_slit_data() (in module msaexp.utils) get_slit_polygons() (msaexp.pipeline.NirspecPipeline method) get_slit_sign() (in module msaexp.utils) get_slit_traces() (msaexp.pipeline.NirspecPipeline method) get_standard_wavelength_grid() (in module msaexp.utils) get_trace_sn() (msaexp.slit_combine.SlitGroup method) get_transforms() (msaexp.msa.MSAMetafile method) get_xlimits_from_lines() (in module msaexp.drizzle) glob_sorted() (in module msaexp.utils) grating (msaexp.pipeline.NirspecPipeline attribute) (msaexp.slit_combine.SlitGroup attribute)

H

h2_mass() (msaexp.utils.MolecularHydrogen method)

h_nu_A (msaexp.utils.MolecularHydrogen attribute)

I

igm_absorption() (msaexp.spectrum.SpectrumSampler method) initialize_emission_line() (msaexp.spectrum.SpectrumSampler method) initialize_flux_table() (msaexp.utils.MolecularHydrogen method) initialize_from_cals() (msaexp.pipeline.NirspecPipeline method) initialize_slit_metadata() (msaexp.pipeline.NirspecPipeline method)

initialize_spec() (msaexp.spectrum.SpectrumSampler method) insert_spaces_in_labels() (msaexp.utils.LineList method) integrate_spectrum_filter() (in module msaexp.spectrum) is_fixed_slit (msaexp.pipeline.NirspecPipeline attribute) IS_FIXED_SLIT (msaexp.slit_combine.SlitGroup attribute) ix (msaexp.utils.MolecularHydrogen attribute)

K

key_pairs (msaexp.msa.MSAMetafile attribute)

L

label (msaexp.spectrum.SpectrumSampler attribute) LEFT_OFFSET_KWARGS (msaexp.utils.LineList attribute) line_flam_to_fnu() (in module msaexp.utils) line_flux() (msaexp.utils.MolecularHydrogen method) line_names() (msaexp.utils.MolecularHydrogen method) LineList (class in msaexp.utils)

load_data() (msaexp.utils.LineList method) (msaexp.utils.MolecularHydrogen method) load_sensitivity_curve() (msaexp.spectrum.SpectrumSampler method) load_sflat_data() (in module msaexp.utils) load_slit_data() (msaexp.pipeline.NirspecPipeline method) longslit_header_from_wcs() (in module msaexp.utils) LookupTablePSF (class in msaexp.utils)

M

make_diff_image() (msaexp.slit_combine.SlitGroup method) make_nirspec_gaussian_profile() (in module msaexp.utils) make_optimal_extraction() (in module msaexp.drizzle) make_summary_table() (msaexp.msa.MSAMetafile method) mask_stuck_closed_shutters() (msaexp.slit_combine.SlitGroup method) mast_key_pairs (msaexp.msa.MSAMetafile attribute) max_lightness (msaexp.utils.ClippedColormap attribute) merge_source_ids() (msaexp.msa.MSAMetafile method) meta (msaexp.spectrum.SpectrumSampler attribute) metadata_id_list (msaexp.msa.MSAMetafile attribute) metadata_id_unique (msaexp.msa.MSAMetafile attribute) metadata_tuple() (in module msaexp.drizzle) module msaexp.cloud msaexp.drizzle msaexp.msa msaexp.pipeline msaexp.pipeline_extended msaexp.resample msaexp.resample_numba msaexp.slit_combine msaexp.spectrum msaexp.utils module_data_path() (in module msaexp.utils)

MolecularHydrogen (class in msaexp.utils) msa_slit_sflat() (in module msaexp.utils) msaexp.cloud module msaexp.drizzle module msaexp.msa module msaexp.pipeline module msaexp.pipeline_extended module msaexp.resample module msaexp.resample_numba module msaexp.slit_combine module msaexp.spectrum module msaexp.utils module MSAMetafile (class in msaexp.msa) multiplot() (msaexp.spectrum.SpectrumSampler method) multiplot_spectra() (in module msaexp.spectrum)

N

N (msaexp.pipeline.NirspecPipeline attribute) (msaexp.slit_combine.SlitGroup attribute) (msaexp.utils.ClippedColormap attribute) (msaexp.utils.LineList attribute) (msaexp.utils.MolecularHydrogen attribute)

NirspecPipeline (class in msaexp.pipeline) Nj() (msaexp.utils.MolecularHydrogen method) norm (msaexp.utils.ClippedColormap attribute) nu (msaexp.utils.MolecularHydrogen attribute)

O

objfun_prf() (in module msaexp.utils)

oversampled_wavelengths() (msaexp.spectrum.SpectrumSampler method)

P

parse_data() (msaexp.slit_combine.SlitGroup method) parse_metadata() (msaexp.slit_combine.SlitGroup method) parse_slit_info() (msaexp.pipeline.NirspecPipeline method) path_loss() (msaexp.utils.LookupTablePSF method) pixel_integrated_gaussian() (in module msaexp.resample) pixel_integrated_gaussian_numba() (in module msaexp.resample_numba) pixfrac_steps() (in module msaexp.utils)

plot_2d_differences() (msaexp.slit_combine.SlitGroup method) plot_msa_shutters() (in module msaexp.msa) plot_profile() (msaexp.slit_combine.SlitGroup method) plot_slitlet() (msaexp.msa.MSAMetafile method) plot_spectrum() (in module msaexp.spectrum) preprocess() (msaexp.pipeline.NirspecPipeline method) pseudo_drizzle() (in module msaexp.slit_combine)

Q

query_mast_exposures() (msaexp.msa.MSAMetafile method)

query_product_level (msaexp.msa.MSAMetafile attribute) query_program() (in module msaexp.pipeline)

R

read_apt_shutter_csv() (in module msaexp.msa) read_data() (msaexp.utils.LookupTablePSF method) read_spectrum() (in module msaexp.spectrum) redo_1d_extraction() (msaexp.spectrum.SpectrumSampler method) reference (msaexp.utils.MolecularHydrogen attribute) regions_from_fits() (in module msaexp.msa) regions_from_metafile() (in module msaexp.msa) (msaexp.msa.MSAMetafile method) regions_from_metafile_siaf() (msaexp.msa.MSAMetafile method) regrid() (msaexp.spectrum.SpectrumSampler method)

relative_nod_offset (msaexp.slit_combine.SlitGroup attribute) rename_source() (in module msaexp.utils) resample_bagpipes_model() (in module msaexp.spectrum) (msaexp.spectrum.SpectrumSampler method) resample_eazy_template() (msaexp.spectrum.SpectrumSampler method) resample_template() (in module msaexp.resample) resample_template_numba() (in module msaexp.resample_numba) resize_subarray_to_full() (in module msaexp.utils) RIGHT_OFFSET_KWARGS (msaexp.utils.LineList attribute) run_jwst_pipeline() (msaexp.pipeline.NirspecPipeline method) run_pipeline() (in module msaexp.pipeline_extended)

S

salim_alambda() (in module msaexp.resample_numba) sample_gaussian_line() (in module msaexp.resample) sample_gaussian_line_numba() (in module msaexp.resample_numba) save_slit_data() (msaexp.pipeline.NirspecPipeline method) select_lines() (msaexp.utils.LineList method) separate_ZT (msaexp.utils.MolecularHydrogen attribute) set_background_slits() (msaexp.pipeline.NirspecPipeline method) set_background_spectra() (msaexp.slit_combine.SlitGroup method) set_bad_pixel_flag() (in module msaexp.utils) set_clim (msaexp.utils.ClippedColormap attribute) set_msa_axis_ticks() (in module msaexp.msa) set_plot_style() (in module msaexp.utils) set_slit_coords() (msaexp.utils.LookupTablePSF method) set_slit_offset() (msaexp.utils.LookupTablePSF method) set_trace_coeffs() (msaexp.slit_combine.SlitGroup method) show_drizzled_product() (in module msaexp.drizzle) show_drizzled_slits() (in module msaexp.drizzle) shutter_xcen_ycen_from_id() (in module msaexp.utils) simpson() (in module msaexp.resample_numba) sky_background (msaexp.slit_combine.SlitGroup attribute) slit_best_source_alias() (in module msaexp.msa) slit_data_from_extended_reference() (in module msaexp.utils) slit_extended_flux_calibration() (in module msaexp.utils)

slit_hot_pixels() (in module msaexp.utils) slit_index() (msaexp.pipeline.NirspecPipeline method) slit_metadata() (msaexp.slit_combine.SlitGroup method) slit_normalization_correction() (in module msaexp.utils) slit_pixel_scale (msaexp.slit_combine.SlitGroup attribute) slit_shutter_scale (msaexp.slit_combine.SlitGroup attribute) slit_shutter_scale() (in module msaexp.utils) slit_source_regions() (msaexp.pipeline.NirspecPipeline method) slit_trace_center() (in module msaexp.utils) SlitGroup (class in msaexp.slit_combine) smc_alambda() (in module msaexp.resample_numba) smc_attenuation() (in module msaexp.resample_numba) smooth_velocity() (msaexp.spectrum.SpectrumSampler method) source_ypixel_position (msaexp.slit_combine.SlitGroup attribute) spec (msaexp.spectrum.SpectrumSampler attribute) spec_model() (msaexp.utils.LineList method) (msaexp.utils.MolecularHydrogen method) spec_R_fwhm (msaexp.spectrum.SpectrumSampler attribute) spec_wobs (msaexp.spectrum.SpectrumSampler attribute) SpectrumSampler (class in msaexp.spectrum) split_visit_groups() (in module msaexp.slit_combine) square_axes() (in module msaexp.utils) stale (msaexp.utils.ClippedColormap attribute) step_reference_files() (in module msaexp.pipeline_extended)

T

targets (msaexp.pipeline.NirspecPipeline attribute) temperature_powerlaw() (msaexp.utils.MolecularHydrogen static method) tight_colorbar() (in module msaexp.utils)

to_linelist() (msaexp.utils.MolecularHydrogen method) to_rgba() (msaexp.utils.ClippedColormap method) trapz() (in module msaexp.resample_numba) trapz_dx() (in module msaexp.resample_numba)

U

unp (msaexp.slit_combine.SlitGroup attribute) update_flux_table() (msaexp.utils.MolecularHydrogen method)

update_slit_dq_mask() (in module msaexp.utils) update_slit_metadata() (in module msaexp.utils) update_trace_from_coeffs() (msaexp.slit_combine.SlitGroup method)

V

valid (msaexp.spectrum.SpectrumSampler attribute)

vmax (msaexp.utils.ClippedColormap attribute) vmin (msaexp.utils.ClippedColormap attribute)

W

wave_step (msaexp.spectrum.SpectrumSampler attribute)

WHITE_BBOX (msaexp.utils.LineList attribute) write() (msaexp.msa.MSAMetafile method)

Z

ZT() (msaexp.utils.MolecularHydrogen method)